Russ. J. Bioorganic Chem., 2001, 27(4):248-255

Extensive Complementarity of the Shine-Dalgarno Region and 3′-End of 16S rRNA Is Inefficient for Translation in vivo

Translation initiation in Escherichia coli involves as a rule complementary interactions between a Shine-Dalgarno (SD) sequence upstream of the initiation codon and a highly conserved 3′-end sequence of 16S rRNA (anti-SD). The translation efficiency is believed to be directly affected by the affinity of the ribosome to the mRNA initiation region. Earlier, high-affinity RNA ligands to E. coli ribosomes were selected by the SELEX approach, with the ligands containing an extended SD-sequence well represented. In this work, we examined the ability of artificial ribosome binding sites (RBSs) containing such an extended (10-nt) SD-sequence (super-SD) to drive translation in vivo, as well as its ability to form the translation initiation complex in vitro. Toeprint experiments showed the formation of a ternary initiation complex on mRNA comprising super-SD. Moreover, they proved the formation of an extended SD duplex in the binary 30S-mRNA complex. Nevertheless, the super-SD appeared to be inefficient in translation in vivo. We believe that the initiation complex involving a super-SD-element is too stable to be functional; it may impede the transition from initiation to elongation, thus disrupting the transcription-translation coupling and inhibiting the formation of polysomes.

Komarova AV, Tchufistova LS, Supina EV, Boni IV

IBCH: 5534
Ссылка на статью в журнале: http://link.springer.com/10.1023/A:1011356520576
Кол-во цитирований на 04.2024: 4
Информация пока не проверена модераторами