Laboratory of Extrasynaptic Signalling

Department of Molecular Neurobiology

Head: Alexey Semyanov, corr. member of the RAS

neurons, glia, brain


The laboratory is engaged in research of cellular and molecular mechanisms of information coding in neurons and glia networks, which are the basis of learning and memory.

Researchers are solving the following tasks:
  • To study how internal factors (hormones, pregnancy, aging) and environmental factors (anthropogenic pollution, nutrition, microbiota) influence on the brain functions.
  • To study of neurodegenerative diseases, such as epilepsy, Alzheimer's disease, lateral amyotrophic sclerosis, Parkinson's disease.
  • Mathematical modeling of processes in the brain.
  1. Cell technologies. Studies using electrophysiological and optical methods of processes occurring in neuron-astrocytic cultures derived from animals or from human iPS cells.
  2. Work with brain sections. The use of electrophysiological (patch-clamp) and optical methods – two-photon laser scanning microscopy, FLIM, superresolution.
  3. In vivo studies. Optical imaging and electrophysiology in vivo, behavior.

All publications (show selected)


Alexey Semyanov

Patterns of Calcium Dynamics in Brain Astrocytic Networks

Astrocytes encode the state of local neural environment in spatiotemporal patterns of Ca2+ activity. In turn, Ca2+ events in astrocytes trigger release of gliotransmitters, modulate synaptic plasticity and local blood flow via various mechanisms. The use of genetically encoded Ca2+ indicators has allowed to visualize astrocytic Ca2+ activity on multiple scales from thin distal processes to whole cell domains to cell networks. Interpretation of imaging data requires adequate techniques of data processing, including motion correction, denoising, signal separation to slow and fast components, segmentation of separate Ca2+ events, and revealing possible recurrent patterns in their initiation. Here we demonstrated that spontaneous Ca2+ activity in single astrocyte takes form of separate events, which primarily located in the periphery of astrocytic spatial domains. The Ca2+ events (yellow tinctures at the processed image) spanned across wide range of sizes and durations. The fluorescence amplitude, the rates of rise and decay within such Ca2+ events were linked to the local cell morphology (e.g. thickness of the process). At the network level, the Ca2+ activity was fluctuating, most of the population activity peaks was explained by appearance of large size events, engulfing whole astrocyte domains, rather than an increase in events frequency. The proposed techniques and experimental data can shed light on the principles that define the formation of spatiotemporal patterns of astrocytic Ca2+ activity and possible involvement of these patterns in cognitive tasks.


  1. Браже АР, Доронин МС, Попов АВ, Денисов Александро, Семьянов АВ (2019). Patterns of Calcium Dynamics in Brain Astrocytic Networks. Ross Fiziol Zh Im I M Sechenova 105 (11), 1436–1451

3D reconstruction of astrocytic processes

3D reconstruction of astrocytic processes was obtained using electron microscopy of series slices. Astrocytic processes consisted of branchlets, shafts-like structures containing organelles, and leaflets, thin organelle-free perisynaptic processes attached to the branchlets. We observed leaflets of different sizes and shapes and showed that leaflet enlargement may potentially prepare the space to accept ER cisterns and leaflet conversion to branchlets extensions. Was shown that number of glutamatergic synaptic contact to a leaflet is determined only by the leaflet size.


  1. Gavrilov N, Golyagina I, Brazhe A, Scimemi A, Turlapov V, Semyanov A (2018). Astrocytic coverage of dendritic spines, dendritic shafts, and axonal boutons in hippocampal neuropil. Front Cell Neurosci 12, 248