NMR spectroscopy reveals patterns and thermodynamic parameters of dimerization of β-hairpin antimicrobial peptides in the membrane
Oligomerization in bacterial membrane is a key step in many proposed mechanisms of antibiotic action of antimicrobial peptides (AMPs). Thermodynamics of the dimerization process of β-hairpin AMPs in a membrane-like environment of DPC micelles was studied using the example of the capitellacin peptide from of the marine polychaete Capitella teleta. Transitions between the monomer and dimer states with changes in temperature and detergent concentration were described by NMR spectroscopy. Both structural forms of capitellacin bind to the micelle surface, which is consistent with the “carpet” mechanism of membrane action. A comparative analysis of the physicochemical properties of β-hairpin AMPs revealed a positive correlation between the hydrophobicity of the peptide, the stability of its dimers and hemolytic activity. The results of the work were published in the journal Biomolecules. Learn more
News
- NMR spectroscopy reveals patterns and thermodynamic parameters of dimerization of β- hairpin antimicrobial peptides in the membrane
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IV.10 The staff of the Laboratory of structural biology of ion channels and the Science–Educational center for the first time studied the thermodynamics of the dimerization process of a β-hairpin peptide in the membrane-mimicking environment of detergent micelles using the example of the antimicrobial peptide (AMP) capitellacin of the marine polychaete Capitella teleta. The study also describes the mechanism of capitellacin action on bacterial membranes. The results of the work were published in the journal Biomolecules.
- Human RPF1 and ESF1 in Pre-rRNA Processing and Assembly of Pre-Ribosomal Particles: A Functional Study
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III.6 Ribosome biogenesis is a sophisticated time-ordered process, which adjusts the protein synthesis rate to consumption of nutrients and external stimuli. It begins with transcription of the ribosomal primary RNA precursor. 13.3 kB 47S (fig.) pre-rRNA processing is coupled with the sequential recruitment of ribosome biogenesis factors and non-coding RNAs as well as ordered coating of rRNA with ~80 ribosomal proteins during formation of the functional 60S and 40S ribosomal subunits.
- The rational design of an efficient biocatalyst for the phosphoribosylation of antiviral pyrazine-2- carboxamide derivatives
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II.27 The antiviral T-1105 and T-705 (Favipiravir) compounds are inactive prodrugs that undergo metabolic transformation into the active form through phosphoribosylation in vivo. The efficiency of this process in human cells is very low, making the production of the phosphoribosylated pyrazine-2-carboxamide derivatives in vitro is a worthy challenge.
Events
- "Molecular Brain" seminar
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IX.8.23 (This event is over) The seminar will take place on 08 September at 15:00 in the Minor hall. Professor Naira Ayvazyan, Director of the Orbeli Institute of Physiology of NAS RA (Yerevan, Armenia), will talk about the research conducted at this center. In particular, she will touch on the mechanisms of poisoning with snake venom. Everyone is cordially invited.
- "Molecular Brain" seminar, Epilepsy and channelopathies: from molecular mechanisms to the clinic and back
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IX.22.22 (This event is over) The seminar will take place on September 22 at 16:00 in the Minor hall. Three presentations will focus on the current understanding of epilepsy and channelopathies and will consider various aspects: molecular and physiological mechanisms, as well as approaches to therapy. Everyone is cordially invited!